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Nature Aging· 2026Q1

A microprotein atlas of the human frontal cortex in Alzheimer’s disease

Brendan Miller, Eduardo Vieira de Souza, Calvin Lau, Joan Vaughan et al.

Short summary

Researchers created a brain microprotein (MP) atlas from over 600 frontal cortex samples, identifying 1,067 MPs not previously cataloged, with spectral evidence. A subset of these MPs are differentially expressed in Alzheimer's disease (AD).

AI-generated from the title and abstract; the full text is not read.

Key points

  • Developed a brain microprotein (MP) atlas using transcriptomics, mass spectrometry, and deep learning across >600 frontal cortex samples.
  • Identified 1,067 novel MPs with high-confidence spectral support, expanding the annotated brain proteome.
  • Found a subset of MPs are differentially expressed in Alzheimer's disease (AD) independently of annotated main ORFs.
  • Discovered an MP encoded by MKKS is downregulated in AD and impairs microglial mitochondrial respiration.

AI-generated from the title and abstract; the full text is not read.

Abstract

Understanding the molecular basis of neurodegeneration requires a comprehensive map of the genome's protein-coding output. Although thousands of small open reading frames (ORFs) are translated in the human brain, proteomic evidence for their encoded microproteins (MPs) (≤150 amino acids (aa)) remains limited. Here, we present a brain MP atlas that integrates transcriptomics, mass spectrometry and deep-learning-predicted spectra across more than 600 postmortem frontal cortex samples with and without Alzheimer's disease (AD). We identified 1,067 MPs absent from reviewed UniProtKB entries with high-confidence spectral support. A subset is differentially expressed in AD independently of the annotated main ORF at the same locus. A small ORF expressed by MKKS encodes a 63-amino-acid MP that is the locus's predominant translation product and is downregulated in AD; its loss impairs microglial mitochondrial respiration, implicating it in microglial bioenergetics. This atlas expands the annotated brain proteome and provides a resource for studying MPs in aging and neurodegeneration.

The authors' abstract, as published at the source. Nature Aging, 2026 · DOI ↗

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Field: Physiology

PhysiologyMedicine