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eLife· 2026Q1

Inferring variant-specific effective reproduction numbers from combined case and sequencing data

Marlin D Figgins, Trevor Bedford

Short summary

A new model jointly estimates variant-specific effective reproduction numbers (R_t) and frequencies using US case and sequence data (Jan 2021-Mar 2022), revealing consistent growth advantages for specific SARS-CoV-2 variants across locations.

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Field: Modeling and Simulation

Modeling and SimulationMathematics